iGEM 2012 infomøde d. 28. februar

iGEM er en international konkurrence for universitetsstuderende forskerspirrer indenfor feltet syntetisk biologi. De enkelte hold battler med deres biologiske maskiner, som de selv har designet og konstrueret med DNA-teknologi. Konkurrencen afholdes hvert efterår i to dele. Først regionale kvalifikationskonkurrencer i Europa, Asien og Amerika, hvor de bedste hold går videre til hovedkonkurrencen på MIT i Boston.

SDU iGEM holdet er den syddanske delegation, der tidligere har høstet anerkendelse ved konkurrencen. Vi søger interesserede studerende både fra bachelor- og kandidatstudier der kunne tænke sig at prøve kræfter med alle aspekter af forskning (herunder research, projektplanlægning, forsøgsdeign
og fundraising) og praktisk laboratoriearbejde, og som ikke har noget imod at bruge det meste af en sommerferie i laboratoriet. Man får til gengæld mulighed for at møde ca. 1500 ligesindede fra i alt 150 hold fra hele verden, praktisk erfaring og en oplevelse med for livet.

Vi afholder infomøde d. 28/02 kl 17 i lokale 19.04 i Winsløwparken 19 ved OUH.
Der vil være et kort oplæg om konkurrencen, information om SDU holdet, samt et oplæg fra en tidligere deltager ved konkurrencen.

Er du stadig ikke overbevist? eller vil du vide mere? Så check
http://2012.igem.org , http://igem.sdu.dk

Er du interesseret i at være på iGEM 2012 holdet?

Nu er det nye år begyndt og forberedelserne for iGEM konkurrencen i 2012 er stille og rolig gået i gang ved SDU.

Har du interesse i syntetisk biologi, vil du gerne lave noget selvstændig forskning eller er du bare helt vild med bakterier? Hvis du kan svare ja til bare ét af disse spørgsmål så er iGEM noget for dig.

Du ved ikke hvad iGEM er? Ikke noget problem, iGEM er verdens største konkurrence for studerende i syntetisk biologi. Det handler om at bygge en bakteriel maskine over sommerferien sammen med en masse andre studerende fra SDU og til sidst præsentere projektet til konkurrencens andre deltagere, som kommer fra hele verden!

Ved interesse send en mail med dit navn og lidt om dig selv til lalun09@student.sdu.dk .

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Mere information om hvad iGEM er kan du finde her: http://igem.org/About , http://igemwatch.net , http://partsregistry.org

Got nothing to read about iGEM?

Well this blog is a little deserted since the University of Southern Denmark is not participating in the iGEM competition this year. If you still would like to read a blog about the iGEM competition then try checking out http://igemwatch.net which is a blog about this year’s iGEM competition that spotlights interesting projects from this year´s competition you may not have heard about yet. The blog i being written by a former member of the 2010 iGEM team from the SDU and a former member of the 2009 iGEM team. Try checking it out, we really try to make it interesting! :)

Long time no see (or: Fundraising is hard)!

Hi everyone, how have you been?

A new iGEM season is just about to start and we at SDU are naturally trying to get the ball rolling again this year. After our great success last year we want to improve our results even more this year and aim for the grand prize! :)
There is just ONE problem, we can not win without money. So first things first: We have to raise some money. Oh joy! Writing applications and searching for sponsorships is great fun (or not…), but it is something that just has to be done so we all can look forward to another succesful iGEM year in 2011. Right now we are working on an application for the Mogens Rendals foundation, which will hopefully result in us getting some funding, so that the trip to the jamboree will already be paid.
We also need sponsorships again this year and hope that the last year’s sponsors were content with our effort and interested in sponsoring us again. BUT: As soon as we have secured some money we want to start the team ASAP and this is where you come in. Do you have interest in participating in iGEM 2011 or know somebody who is interested? Then write in the comments or send a mail to igemsdu2010(at)gmail(dot)com. This is only to gauge student interest, since it also would be kind of stupid to gather a lot of money and then there is noone who wants to be on the team. So let if you have any interest contact me or anyone else involved with starting this year’s team. I am pretty confident that there a lot of people interested in participating in iGEM, so don’t prove me wrong! ;)

We won gold!

We were awarded a gold medal! And a speciale prize for our safety considerations, nice!

Happy team

Happy team

After we got home, we where featured in a local television station and a science magazine. Check it out:

Danske studerende får pris for vandmærke til bakterie

Studerende vinder guld

The Dead line

It’s the dead of night. The world around us is silent and enormous in its darkness. Ominous. Even the insomniacs are fast asleep. But not us. We’ve hardly slept in days.

We are the iGEMs.

A small group of people, awake if only barely. We keep on working, hour after endless hour, mechanically, driven by will alone. We fight the urge to close our eyes, banishing the thought of giving up even for a second. The goal is so close now, we can almost touch it. We must not be weak. We must not falter. We are so close.

The clock is ticking, racing, towards the point of no return, the bittersweet release. The point where our labour is at an end and we can do nothing but wait.

Only 1 and a half weeks til deadline!

October 27th is fast approaching and we have LOADS that need to be done and finnished!

Until now we have been divided into three lab groups (flagella, photosensor and retinal), one philosophy group and one modelling group.

Yesterday, Sunday October 17th we held a meeting were we dissolved the lab groups so that no one have a brick that is theirs, and we made a timetable to get an overview of how much time each of us are willing to put into the last week and a half.
It looks like some of us are going to live at the university until the deadline!

We also made a list of things to do, for example the the wiki needs a lot of work,  also the last lab work on the flagella brick and the characterisations has to be done.

iGEM SDU article in The Engineer

Friday October 1st the danish magazine The Engineer published an article about us!

We give you here a translation of the article and a link to the original story.

Student aim on gold for their synthetic E. coli, that  flee from blue light

Students from Southern University is currently developing a photo tactical bacterium that converts light into mechanical work.

By Robin Engelhardt, Saturday 02 October 2010 pm. 11:00

A team bioengineer students from Southern University is getting ready for the annual iGEM competition to be held at MIT in Cambridge, USA, 5th-8th November. They have created an artificial E. coli bacteria with a photo sensor that enables the bacterium to move away when you shine the blue light on it.

There are still a few things missing, “says instructor Mike Barnkob, but he is confident that they have a good project:

“E. coli bacteria have some flagella they can wing. We found out that you can control them by combining with genes from other bacteria and then shine light on them. Blue light causes them to turn about and if it is dark in a different direction, they move there. “

Right now the team from SDU got the first proof that the system works and they are now conducting further characterization to see what types of light, it responds to, and how quickly they can get the bacterium to move.

The pictures show two petri dishes, respectively. a normal and a synthetic bacterial culture. Both have grown for 44 hours, and both have been covered halfway over. One can see how the manipulated culture moves toward the dark area.

The idea is that at a later stage to create a flow in a micro tube by coating the pipe with a layer of the new type of E. coli.

“It has actually proved to be a problem to mix liquids properly in very small areas,” explains Barnkob.

“By adding the bacteria, they can be whipped into the liquid with their little tails, which means you can control how liquids mix in small micro-tubes.”

Great interest
IGEM stands for International Genetically Engineered Machine and allows students from universities around the world to participate in the emerging field of synthetic biology, which are sometimes also called the do-it-yourself biology.

The competition has been held since 2004, and Denmark has been represented by two teams since 2009 - one from Southern University and one from DTU.

“What we thought was really cool about this project, is that it is fundamental that we know that light at a bacterium capable of converting light energy to a form of mechanical work,” says Barnkob.

“The important thing about iGEM’s getting to grips with the biological programming and see what you can do with it and what not.”

Over the past six years, students have built so-called BioBricks that form the foundation for programming biological organisms, which can range from being bacterial cameras and bio-beer to biological landmine detectors.

Last year the students from Southern University made a bacteria-filled bandage that ensures a better supply of antibiotics for a wound. The team from DTU in 2009 got a gold medal for the design of a ‘redoxilator’ that glows green when the bacterial metabolism is high and ready to produce.

“I will, in all modesty say we’ve got a super team with all 14 students from physics to biomedicine, molecular biology and medicine to philosophy,” says Barnkob from SDU.

“We hope to get gold in Boston. Last year we got bronze, and this year we believe that we have gotten a lot further. “

Happy experiment

From pwned experiments:

“I have no idea why, but all four of my bacterial pellets spontaneously formed happy faces of some random dark material. I have no idea how this happened, but I’m taking it as a good omen!”

The Triangle Experiment